Dave
before you look at the fuel rack, take some more time noodling.
check your fuel return flow i dont know what it should be for your JD but its a constant to rpm, so if you are idling at 6500rpm no lode your fuel pump should return X gpm, a JD service rep should be able to give you an idea. so if the rep tells you your eng. should return 1/2 gpm and your getting 1/4 you got a flow issue.
if your using a racor filter, brake it down and make sure the float ball and water spinner are clear. you would be amazed at how much mung can build up there. i have seen 1000hp shut down while towing, stopped by mung in the racor Assembly, not the filter.
after braking down cleaning and reassembling your racor, assuming your using that filter system. if you still have a flow issue think about your fuel lines. or plugged stinger - pickup. if your stinger is clear run a new temporary hose from pickup to filter. old fuel lines brake down and collapse internally so the line looks ok but the liner in the fuel line separate and blocks the line often only one way like a check valve.
if you have been running your fuel system for a long time with a air leek or restricted fuel flow or run dry often or have over 10,000 hr on the rack and have checked all above, then get the rack looked at.
hope that helps im sure others that run that eng. will also have insight
jest a little diesel deaf A
sam